Cells Responding to Closely Related Cholesterol-Dependent Cytolysins Release Extracellular Vesicles with a Common Proteomic Content Including Membrane Repair Proteins

Toxins (Basel). 2022 Dec 20;15(1):4. doi: 10.3390/toxins15010004.

Abstract

The plasma membrane (PM) protects cells from extracellular threats and supports cellular homeostasis. Some pathogens produce pore-forming toxins (PFTs) that disrupt PM integrity by forming transmembrane pores. High PFT concentrations cause massive damage leading to cell death and facilitating infection. Sub-lytic PFT doses activate repair mechanisms to restore PM integrity, support cell survival and limit disease. Shedding of extracellular vesicles (EVs) has been proposed as a key mechanism to eliminate PFT pores and restore PM integrity. We show here that cholesterol-dependent cytolysins (CDCs), a specific family of PFTs, are at least partially eliminated through EVs release, and we hypothesize that proteins important for PM repair might be included in EVs shed by cells during repair. To identify new PM repair proteins, we collected EVs released by cells challenged with sub-lytic doses of two different bacterial CDCs, listeriolysin O and pneumolysin, and determined the EV proteomic repertoire by LC-MS/MS. Intoxicated cells release similar EVs irrespectively of the CDC used. Also, they release more and larger EVs than non-intoxicated cells. A cluster of 70 proteins including calcium-binding proteins, molecular chaperones, cytoskeletal, scaffold and membrane trafficking proteins, was detected enriched in EVs collected from intoxicated cells. While some of these proteins have well-characterized roles in repair, the involvement of others requires further study. As proof of concept, we show here that Copine-1 and Copine-3, proteins abundantly detected in EVs released by intoxicated cells, are required for efficient repair of CDC-induced PM damage. Additionally, we reveal here new proteins potentially involved in PM repair and give new insights into common mechanisms and machinery engaged by cells in response to PM damage.

Keywords: calcium influx; extracellular vesicles; listeriolysin O; plasma membrane repair; pneumolysin; pore-forming toxins; proteomics; shedding.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Membrane / metabolism
  • Cholesterol / metabolism
  • Chromatography, Liquid
  • Cytotoxins* / pharmacology
  • Extracellular Vesicles* / metabolism
  • Membrane Proteins / metabolism
  • Proteomics
  • Tandem Mass Spectrometry

Substances

  • Cytotoxins
  • Membrane Proteins
  • Cholesterol

Grants and funding

This research was funded by FEDER—Fundo Europeu de Desenvolvimento Regional through the COMPETE 2020—Operational Programme for Competitiveness and Internationalization (POCI), Portugal 2020, and by Portuguese funds through FCT—Fundação para a Ciência e a Tecnologia/Ministério da Ciência, Tecnologia e Ensino Superior in the framework of the project POCI-01-0145-FEDER-030863 (PTDC/BIA-CEL/30863/2017). This work has also been supported by EPIC-XS (EPIC-XS-0000163) funded by the Horizon 2020 program of the European Union. J.M.P. is the recipient of an FCT fellowship (SFRH/BD/143940/2019). R.L.M. is supported by the Flemish Institute for Biotechnology (VIB) and a faculty interim fellowship from the UGent Faculty of Medicine and Health Sciences. F.I. acknowledges support from Odysseus grant G0F8616N from the Research Foundation Flanders (FWO) and from Ghent University Concerted Research Action grant BOF21/GOA/033. S.S. received support from FCT in the framework of the CEEC-Institutional 2017 program.