Therapeutic adenine base editing of human hematopoietic stem cells

Nat Commun. 2023 Jan 13;14(1):207. doi: 10.1038/s41467-022-35508-7.

Abstract

In β-thalassemia, either γ-globin induction to form fetal hemoglobin (α2γ2) or β-globin repair to restore adult hemoglobin (α2β2) could be therapeutic. ABE8e, a recently evolved adenine base editor variant, can achieve efficient adenine conversion, yet its application in patient-derived hematopoietic stem cells needs further exploration. Here, we purified ABE8e for ribonucleoprotein electroporation of β-thalassemia patient CD34+ hematopoietic stem and progenitor cells to introduce nucleotide substitutions that upregulate γ-globin expression in the BCL11A enhancer or in the HBG promoter. We observed highly efficient on-target adenine base edits at these two regulatory regions, resulting in robust γ-globin induction. Moreover, we developed ABE8e-SpRY, a near-PAMless ABE variant, and successfully applied ABE8e-SpRY RNP to directly correct HbE and IVS II-654 mutations in patient-derived CD34+ HSPCs. Finally, durable therapeutic editing was produced in self-renewing repopulating human HSCs as assayed in primary and secondary recipients. Together, these results support the potential of ABE-mediated base editing in HSCs to treat inherited monogenic blood disorders.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenine / metabolism
  • Antigens, CD34 / genetics
  • Antigens, CD34 / metabolism
  • CRISPR-Cas Systems / genetics
  • Fetal Hemoglobin / genetics
  • Gene Editing* / methods
  • Hematopoietic Stem Cells / metabolism
  • Humans
  • beta-Thalassemia* / genetics
  • gamma-Globins / genetics

Substances

  • Adenine
  • Antigens, CD34
  • Fetal Hemoglobin
  • gamma-Globins