Super-Resolution Detection of DNA Nanostructures Using a Nanopore

Adv Mater. 2023 Mar;35(12):e2207434. doi: 10.1002/adma.202207434. Epub 2023 Feb 12.

Abstract

High-resolution analysis of biomolecules has brought unprecedented insights into fundamental biological processes and dramatically advanced biosensing. Notwithstanding the ongoing resolution revolution in electron microscopy and optical imaging, only a few methods are presently available for high-resolution analysis of unlabeled single molecules in their native states. Here, label-free electrical sensing of structured single molecules with a spatial resolution down to single-digit nanometers is demonstrated. Using a narrow solid-state nanopore, the passage of a series of nanostructures attached to a freely translocating DNA molecule is detected, resolving individual nanostructures placed as close as 6 nm apart and with a surface-to-surface gap distance of only 2 nm. Such super-resolution ability is attributed to the nanostructure-induced enhancement of the electric field at the tip of the nanopore. This work demonstrates a general approach to improving the resolution of single-molecule nanopore sensing and presents a critical advance towards label-free, high-resolution DNA sequence mapping, and digital information storage independent of molecular motors.

Keywords: DNA nanostructures; biosensing; nanopores; single molecules; super-resolution.

MeSH terms

  • Biosensing Techniques* / methods
  • DNA / chemistry
  • Electricity
  • Information Storage and Retrieval
  • Nanopores*
  • Nanostructures* / chemistry
  • Nanotechnology / methods

Substances

  • DNA