Non-covalent interactions reveal the protein chain δ conformation in a flexible single-residue model

Chem Commun (Camb). 2023 Jan 26;59(9):1161-1164. doi: 10.1039/d2cc06658k.

Abstract

The δ conformation is a local secondary structure in proteins that implicates a πamide N-H⋯N interaction between a backbone N atom and the NH of the following residue. Small-molecule models thereof have been limited so far to rigid proline-type compounds. We show here that in derivatives of a cyclic amino acid with a sulphur atom in the γ-position, specific side-chain/backbone N-H⋯S interactions stabilize the δ conformation sufficiently to allow it to compete with classical C5 and C7 H-bonded conformers.

MeSH terms

  • Amides*
  • Protein Conformation
  • Protein Structure, Secondary
  • Proteins*

Substances

  • Proteins
  • Amides