Oxidative Stress and Nuclear Reprogramming: A Pilot Study of the Effects of Reactive Oxygen Species on Architectural and Epigenetic Landscapes

Int J Mol Sci. 2022 Dec 21;24(1):153. doi: 10.3390/ijms24010153.

Abstract

Cell genome integrity is continuously threatened by various sources, both endogenous and exogenous. Oxidative stress causes a multitude of damages, severely affecting cell viability, fidelity of genetic information inheritance, and determining profound alterations in gene expression. Epigenetics represents a major form of gene expression modulation, influencing DNA accessibility to transcription factors and the overall nuclear architecture. When assessing the stress-induced epigenome reprogramming, widely diffused biochemical and molecular approaches commonly fail to incorporate analyses such as architectural chromatin alterations and target molecules precise spatial localization. Unveiling the significance of the nuclear response to the oxidative stress, as well as the functional effects over the chromatin organization, may reveal targets and strategies for approaches aiming at limiting the impact on cellular stability. For these reasons, we utilized potassium bromate treatment, a stressor able to induce DNA damages without altering the cellular microenvironment, hence purely modeling nuclear oxidative stress. By means of high-resolution techniques, we described profound alterations in DNA and histone epigenetic modifications and in chromatin organization in response to the reactive oxygen species.

Keywords: EZH2; antioxidants; chromatin remodeling; epigenetics; gene expression regulation; histone post-translational modification; oxidative stress; potassium bromate.

MeSH terms

  • Cellular Reprogramming* / genetics
  • Chromatin / genetics
  • DNA / metabolism
  • Epigenesis, Genetic
  • Oxidative Stress*
  • Pilot Projects
  • Reactive Oxygen Species / metabolism

Substances

  • Reactive Oxygen Species
  • DNA
  • Chromatin

Grants and funding

This research was funded by the Italian Ministry of Education, University and Research (MIUR): Dipartimenti di Eccellenza Program (2018–2022)—Department of Biology and Biotechnology “L. Spallanzani”, University of Pavia (to M.B.).