Anomalies in dye-terminator DNA sequencing caused by a natural G-quadruplex

PLoS One. 2022 Dec 27;17(12):e0279423. doi: 10.1371/journal.pone.0279423. eCollection 2022.

Abstract

A G-rich DNA sequence from yeast that can form a non-canonical G-quadruplex structure was cloned into a plasmid vector and subjected to Sanger sequencing using dye-labeled dideoxynucleotides. Two different effects were observed. In one, presence of the G4 sequence on the template strand led to incorrect incorporation of an A residue at an internal position in the G4 sequence. In the other, the nascent strand caused attenuation of the readout coincident with synthesis of the G-rich DNA. The two effects are novel examples of disruption in DNA synthesis caused by a G4 sequence. These results provide a new example of a DNA structure that could influence genomic stability in human cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / genetics
  • DNA Replication
  • G-Quadruplexes*
  • Humans
  • Saccharomyces cerevisiae / genetics
  • Sequence Analysis, DNA

Substances

  • DNA

Grants and funding

This research was supported by funds from the Barbara Ann Karmanos Cancer Institute. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. There was no additional external funding received for this study.”