Genome-Based Analysis of Virulence Factors and Biofilm Formation in Novel P. aeruginosa Strains Isolated from Household Appliances

Microorganisms. 2022 Dec 19;10(12):2508. doi: 10.3390/microorganisms10122508.

Abstract

In household washing machines, opportunistic pathogens such as Pseudomonas aeruginosa are present, which represent the household as a possible reservoir for clinical pathogens. Here, four novel P. aeruginosa strains, isolated from different sites of household appliances, were investigated regarding their biofilm formation. Only two isolates showed strong surface-adhered biofilm formation. In consequence of these phenotypic differences, we performed whole genome sequencing using Oxford Nanopore Technology together with Illumina MiSeq. Whole genome data were screened for the prevalence of 285 virulence- and biofilm-associated genes as well as for prophages. Linking biofilm phenotypes and parallelly appearing gene compositions, we assume a relevancy of the las quorum sensing system and the phage-encoded bacteriophage control infection gene bci, which was found on integrated phi297 DNA in all biofilm-forming isolates. Additionally, only the isolates revealing strong biofilm formation harbored the ϕCTX-like prophage Dobby, implicating a role of this prophage on biofilm formation. Investigations on clinically relevant pathogens within household appliances emphasize their adaptability to harsh environments, with high concentrations of detergents, providing greater insights into pathogenicity and underlying mechanisms. This in turn opens the possibility to map and characterize potentially relevant strains even before they appear as pathogens in society.

Keywords: Pseudomonas aeruginosa; biofilm; household appliances; prophages; virulence factors; whole genome sequencing.

Grants and funding

A.K. thanks Bielefeld University for a stipend. Further funding was provided from the Centrum of Biotechnology, the Department of Cell Biology and the Department of Thin Films and Physics of Nanostructures (Center of Spinelectronic Materials and Devices) of the University of Bielefeld. Additional funding was received by grants from the State of North Rhine–Westphalia using funds from the European Regional Development Fund (EFRE) (EFRE-1803FI12) and the Center for Interdisciplinary Material Research and Technology Development (CiMT).