SLC26A4 Phenotypic Variability Influences Intra- and Inter-Familial Diagnosis and Management

Genes (Basel). 2022 Nov 23;13(12):2192. doi: 10.3390/genes13122192.

Abstract

SLC26A4 is one of the most common genes causing autosomal recessive non-syndromic sensorineural hearing loss (SNHL). It has been reported to cause Pendred Syndrome (PDS) and DFNB4 which is deafness with enlarged vestibular aqueduct (EVA). However, mutated SLC26A4 is not conclusive for having either DFNB4 or PDS. Three unrelated Jordanian families consisting of eight affected individuals with congenital bilateral hearing loss (HL) participated in this study. Whole-exome and Sanger sequencing were performed to investigate the underlying molecular etiology of HL. Further clinical investigations, including laboratory blood workup for the thyroid gland, CT scan for the temporal bone, and thyroid ultrasound were performed. Three disease-causing variants were identified in SLC26A4 in the three families, two of which were novel. Two families had a novel pathogenic homozygous splice-site accepter variant (c.165-1G>C), while the third family had compound heterozygous pathogenic variants (c.1446G>A; p.Trp482* and c.304G>A; p.Gly102Arg). Our approach helped in redirecting the diagnosis of several affected members of three different families from non-syndromic HL to syndromic HL. Two of the affected individuals had typical PDS, one had DFNB4, while the rest had atypical PDS. Our work emphasized the intra- and inter-familial variability of SLC26A4-related phenotypes. In addition, we highlighted the variable phenotypic impact of SLC26A4 on tailoring a personalized healthcare management.

Keywords: DFNB4; Pendred syndrome; SLC26A4; enlarged vestibular aqueduct; hearing loss; heterogeneity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biological Variation, Population
  • Hearing Loss, Sensorineural* / diagnosis
  • Hearing Loss, Sensorineural* / genetics
  • Hearing Loss, Sensorineural* / pathology
  • Humans
  • Membrane Transport Proteins* / genetics
  • Mutation
  • Sulfate Transporters / genetics

Substances

  • Membrane Transport Proteins
  • SLC26A4 protein, human
  • Sulfate Transporters

Supplementary concepts

  • Pendred syndrome
  • Deafness, Autosomal Recessive 4

Grants and funding

This work was funded by The University of Jordan Deanship of Scientific Research (grant number 2238).