Genome-wide identification of WOX family members in nine Rosaceae species and a functional analysis of MdWOX13-1 in drought resistance

Plant Sci. 2023 Mar:328:111564. doi: 10.1016/j.plantsci.2022.111564. Epub 2022 Dec 19.

Abstract

WUSCHEL-related homeobox (WOX) transcription factors (TFs) are important in plant development processes and evolutionary novelties. In this study, a genome-wide comprehensive analysis of WOX genes from nine Rosaceae species was carried out, and their potential roles in Malus were subsequently investigated. 125 WOXs in 9 Rosaceae species were identified and classified into three clades, i.e., the ancient, intermediate, and WUS clades. Prunus. domestica contained the most intra-genomic collinearity among the nine Rosaceae species. Additionally, the cis-elements in WOX gene family members were compared and classified into three categories, including phytohormone-responsive, plant growth and development, and abiotic and biotic stresses. Overexpression (OE) of MdWOX13-1 also increased the callus weight and enhanced ROS scavenging against drought stress. Furthermore, via yeast-one hybrid assay and LUC analyses, MdWOX13-1 could directly bind to the MdMnSOD promoter. Therefore, our results will facilitate further study of the WOX genes' function in the Rosaceae family.

Keywords: Drought resistance; Malus domestica; MdWOX13–1; Rosaceae; WOX.

MeSH terms

  • DNA-Binding Proteins / genetics
  • Drought Resistance
  • Gene Expression Regulation, Plant / genetics
  • Multigene Family
  • Phylogeny
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Rosaceae* / genetics
  • Transcription Factors / genetics
  • Transcription Factors / metabolism

Substances

  • Transcription Factors
  • DNA-Binding Proteins
  • Plant Proteins