Extensive diversity of RNA viruses in ticks revealed by metagenomics in northeastern China

PLoS Negl Trop Dis. 2022 Dec 21;16(12):e0011017. doi: 10.1371/journal.pntd.0011017. eCollection 2022 Dec.

Abstract

Background: Ticks act as important vectors of infectious agents, and several emerging tick-borne viruses have recently been identified to be associated with human diseases in northeastern China. However, little is known about the tick virome in northeastern China.

Methods: Ticks collected from April 2020 to July 2021 were pooled for metagenomic analysis to investigate the virome diversity in northeastern China.

Results: In total, 22 RNA viruses were identified, including four each in the Nairoviridae and Phenuiviridae families, three each in the Flaviviridae, Rhabdoviridae, and Solemoviridae families, two in the Chuviridae family, and one each in the Partitiviridae, Tombusviridae families and an unclassified virus. Of these, eight viruses were of novel species, belonging to the Nairoviridae (Ji'an nairovirus and Yichun nairovirus), Phenuiviridae (Mudanjiang phlebovirus), Rhabdoviridae (Tahe rhabdovirus 1-3), Chuviridae (Yichun mivirus), and Tombusviridae (Yichun tombus-like virus) families, and five members were established human pathogens, including Alongshan virus, tick-borne encephalitis virus, Songling virus, Beiji nairovirus, and Nuomin virus. I. persulcatus ticks had significant higher number of viral species than H. japonica, H. concinna, and D. silvarum ticks. Significant differences in tick viromes were observed among Daxing'an, Xiaoxing'an and Changbai mountains.

Conclusions: These findings showed an extensive diversity of RNA viruses in ticks in northeastern China, revealing potential public health threats from the emerging tick-borne viruses. Further studies are needed to explain the natural circulation and pathogenicity of these viruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • China
  • Humans
  • Metagenomics
  • Phylogeny
  • RNA Viruses* / genetics
  • Rhabdoviridae*
  • Ticks*
  • Viruses* / genetics

Grants and funding

This study was supported by the National Key Research and Development Program of China (2022YFC2601900 to ZW), the National Natural Science Foundation of China (82272327 and 82002165 to ZW, and 32072887 to FW), the Outstanding Young Scholars Cultivating Plan of the First Hospital of Jilin University (2021-YQ-01 to ZW), the Pearl River Talent Plan in Guangdong Province of China (2019CX01N111 to QL), the Medical and Health Talent Special Project in Jilin Province of China (JLSWSRCZX2021-002 to ZW), and the Medical Innovation Team Project of Jilin University (2022JBGS02 to QL). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.