DDK promotes DNA replication initiation: Mechanistic and structural insights

Curr Opin Struct Biol. 2023 Feb:78:102504. doi: 10.1016/j.sbi.2022.102504. Epub 2022 Dec 14.

Abstract

DNA replication initiation in eukaryotes is tightly regulated through two cell-cycle specific processes, replication licensing to install inactive minichromosome maintenance (MCM) double-hexamers (DH) on origins in early G1 phase and origin firing to assemble and activate Cdc45-Mcm2-7-GINS (CMG) helicases upon S phase entry. Two kinases, cyclin-dependent kinase (CDK) and Dbf4-dependent kinase (DDK), are responsible for driving the association of replication factors with the MCM-DH to form CMG helicases for origin melting and DNA unwinding and eventually replisomes for bi-directional DNA synthesis. In recent years, cryo-electron microscopy studies have generated a collection of structural snapshots for the stepwise assembly and remodeling of the replication initiation machineries, creating a framework for understanding the regulation of this fundamental process at a molecular level. Very recent progress is the structural characterization of the elusive MCM-DH-DDK complex, which provides insights into mechanisms of kinase activation, substrate recognition and selection, as well as molecular role of DDK-mediated MCM-DH phosphorylation in helicase activation.

Keywords: Cryo-electron microscopy; DDK; DNA replication initiation; Dbf4-dependent kinase; MCM; Replicative helicase activation.

Publication types

  • Review
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Cycle Proteins / genetics
  • Cell Cycle Proteins / metabolism
  • Cryoelectron Microscopy
  • DNA
  • DNA Replication
  • DNA-Binding Proteins / metabolism
  • Minichromosome Maintenance Proteins / chemistry
  • Minichromosome Maintenance Proteins / genetics
  • Minichromosome Maintenance Proteins / metabolism
  • Protein Serine-Threonine Kinases* / genetics
  • Protein Serine-Threonine Kinases* / metabolism
  • Replication Origin
  • Saccharomyces cerevisiae Proteins* / metabolism

Substances

  • Protein Serine-Threonine Kinases
  • DNA-Binding Proteins
  • Saccharomyces cerevisiae Proteins
  • Cell Cycle Proteins
  • Minichromosome Maintenance Proteins
  • DNA