Genome Sequence Resource of Pectobacterium polaris QK413-1 that Causes Blackleg on Potato in Fujian Province, China

Plant Dis. 2023 Jul;107(7):2201-2204. doi: 10.1094/PDIS-08-22-1922-A. Epub 2023 Jun 30.

Abstract

The Pectobacterium pathogens cause soft rot and blackleg diseases on many plants and crops, including potatoes. Here, we first report a high-quality genome assembly and announcement of the P. polaris strain QK413-1, which causes blackleg disease in potatoes in China. The QK413-1 genome was sequenced and assembled using the PacBio Sequel II and Illumina sequencing platform. The assembled genome has a total size of 5,005,507 bp with a GC content of 51.81%, encoding 4,782 open reading frames, including 639 virulence genes, 273 drug resistance genes, and 416 secreted proteins. The QK413-1 genome sequence provides a valuable resource for the control of potato blackleg and research into its mechanism.

Keywords: Illumina sequencing; PacBio Sequel II; Pectobacterium polaris; complete genome sequence; potato blackleg disease.

MeSH terms

  • Pectobacterium* / genetics
  • Plant Diseases / microbiology
  • Plants
  • Solanum tuberosum* / microbiology

Supplementary concepts

  • Pectobacterium polaris