Pterin-based small molecule inhibitor capable of binding to the secondary pocket in the active site of ricin-toxin A chain

PLoS One. 2022 Dec 12;17(12):e0277770. doi: 10.1371/journal.pone.0277770. eCollection 2022.

Abstract

The Ricin toxin A chain (RTA), which depurinates an adenine base at a specific region of the ribosome leading to death, has two adjacent specificity pockets in its active site. Based on this structural information, many attempts have been made to develop small-molecule RTA inhibitors that simultaneously block the two pockets. However, no attempt has been successful. In the present study, we synthesized pterin-7-carboxamides with tripeptide pendants and found that one of them interacts with both pockets simultaneously to exhibit good RTA inhibitory activity. X-ray crystallographic analysis of the RTA crystal with the new inhibitor revealed that the conformational change of Tyr80 is an important factor that allows the inhibitors to plug the two pockets simultaneously.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Catalytic Domain
  • Crystallography, X-Ray
  • Pterins / metabolism
  • Ribosomes / metabolism
  • Ricin* / chemistry

Substances

  • Ricin
  • Pterins

Grants and funding

“RS received financial supports from JSPSKAKENHI (Grant Number 19K05699) and the Faculty of Science Special Grant for Promoting Scientific Research at Toho University. The founders had no role in the study design, data collection, and analysis, decision to publish, or preparation of the manuscript.”