An Accurate Approach for Computational pKa Determination of Phenolic Compounds

Molecules. 2022 Dec 6;27(23):8590. doi: 10.3390/molecules27238590.

Abstract

Computational chemistry is a valuable tool, as it allows for in silico prediction of key parameters of novel compounds, such as pKa. In the framework of computational pKa determination, the literature offers several approaches based on different level of theories, functionals and continuum solvation models. However, correction factors are often used to provide reliable models that adequately predict pKa. In this work, an accurate protocol based on a direct approach is proposed for computing phenols pKa. Importantly, this methodology does not require the use of correction factors or mathematical fitting, making it highly practical, easy to use and fast. Above all, DFT calculations performed in the presence two explicit water molecules using CAM-B3LYP functional with 6-311G+dp basis set and a solvation model based on density (SMD) led to accurate pKa values. In particular, calculations performed on a series of 13 differently substituted phenols provided reliable results, with a mean absolute error of 0.3. Furthermore, the model achieves accurate results with -CN and -NO2 substituents, which are usually excluded from computational pKa studies, enabling easy and reliable pKa determination in a wide range of phenols.

Keywords: CAM-B3LYP; DFT; computational pKa; direct approach; pKa; phenol; solvation model based on density (SMD); thymol.

MeSH terms

  • Density Functional Theory
  • Phenols* / chemistry
  • Thermodynamics
  • Water* / chemistry

Substances

  • Water
  • Phenols

Grants and funding

This research was funded by Lazio Innova—Regione Lazio Progetti Gruppi di Ricerca 2020 (POR FESR LAZIO 2014-2020), grant no. POR A0374E0091 application no. A0375-2020-36654 BeeO-GEL Project.