Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn

Int J Mol Sci. 2022 Nov 30;23(23):14991. doi: 10.3390/ijms232314991.

Abstract

The AP2/ERF gene family involves numerous plant processes, including growth, development, metabolism, and various plant stress responses. However, several studies have been conducted on the AP2/ERF gene family in yellow horn, a new type of oil woody crop and an essential oil crop in China. According to sequence alignment and phylogenetic analyses, one hundred and forty-five AP2/ERF genes were detected from the yellow horn genome. They were divided into four relatively conserved subfamilies, including 21 AP2 genes, 119 ERBP genes, 4 RAV genes, and 1 Soloist gene. Gene analysis of XsAP2/ERF TFs showed 87 XsAP2/ERF TFs lacked introns. There were 75 pairs of collinearity relationships between X. sorbifolium and Arabidopsis, indicating a close similarity. In addition, the expression patterns of XsAP2/ERF TFs under cold treatments confirmed that the XsAP2/ERF TFs play essential roles in abiotic stress response. The expression of eight XsAP2/ERF transcription factors was verified in different tissues and under various stress treatments using RT-qPCR. This study establishes a starting point for further research to explore the potential mechanisms of identifying candidate AP2/ERF TFs that could respond to the abiotic stress of yellow horn.

Keywords: AP2/ERF; characterization; identification; yellow horn.

MeSH terms

  • Arabidopsis* / genetics
  • Arabidopsis* / metabolism
  • Gene Expression Regulation, Plant*
  • Multigene Family
  • Phylogeny
  • Plant Proteins / metabolism
  • Transcription Factors / genetics
  • Transcription Factors / metabolism

Substances

  • Plant Proteins
  • Transcription Factors

Grants and funding

This research was funded by Fine Seedlings of Xanthoceras sorbifolia and Clonal Breeding of Excellent Varieties (20120311015-3).