Single substitution in α-helix of active center enhanced thermostability of Aspergillus awamori exo-inulinase

J Mol Graph Model. 2023 Mar:119:108381. doi: 10.1016/j.jmgm.2022.108381. Epub 2022 Nov 29.

Abstract

Exo-inulinases are applied in inulin hydrolysis and production of feed additives and need to be stable at temperatures of 60-95 °C. Aspergillus awamori exo-inulinase Inu1 is considerably thermostable, with a Tm of 73.2 °C. However, the thermostability of the enzyme should be improved. A single substitution G338A in α-helix in the active center of the enzyme provided a 3.5 °C improvement in Tm. The time of half-life at 70 °C and 80 °C was increased in 5.7- and 2.7-times, respectively, compared to wild-type. Molecular dynamics simulations demonstrated that the substitution G338A caused a decrease in RMSF not only for the α-helix 337-YAANI-341, but also for the catalytically active residues D41 and E241 and the amino acid residues forming the cleft of the active center. Calculations with Constraint Network Analysis for the variant G338A showed the increase in the stability of intramolecular clusters.

Keywords: Aspergillus awamori; Molecular dynamics; Rational design; Thermostability; exo-inulinase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aspergillus* / genetics
  • Enzyme Stability
  • Glycoside Hydrolases* / chemistry
  • Glycoside Hydrolases* / genetics
  • Protein Conformation, alpha-Helical

Substances

  • inulinase
  • Glycoside Hydrolases

Supplementary concepts

  • Aspergillus awamori