Design of MMP-1 inhibitors via SAR transfer and experimental validation

Sci Rep. 2022 Dec 3;12(1):20915. doi: 10.1038/s41598-022-25079-4.

Abstract

New matrix metalloproteinase 1 (MMP-1) inhibitors were predicted using the structure-activity relationship (SAR) transfer method based on a series of analogues of kinesin-like protein 11 (KIF11) inhibitors. Compounds 5-7 predicted to be highly potent against MMP-1 were synthesized and tested for MMP-1 inhibitory activity. Among these, compound 6 having a Cl substituent at the R1 site was found to possess ca. 3.5 times higher inhibitory activity against MMP-1 than the previously reported compound 4. The observed potency was consistent with the presence of an SAR transfer event between analogous MMP-1 and KIF11 inhibitors. Pharmacophore fitting revealed that the higher inhibitory activity of compound 6 compared to compound 4 against MMP-1 might be due to a halogen bond interaction between the Cl substituent of compound 6 and residue ARG214 of MMP-1.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Halogens*
  • Kinesins
  • Matrix Metalloproteinase 1*
  • Receptors, Drug
  • Structure-Activity Relationship

Substances

  • Matrix Metalloproteinase 1
  • Halogens
  • Kinesins
  • Receptors, Drug