m6A RNA methylation impairs gene expression variability and reproductive thermotolerance in Arabidopsis

Genome Biol. 2022 Nov 23;23(1):244. doi: 10.1186/s13059-022-02814-8.

Abstract

Heat-imposed crop failure is often attributed to reduced thermotolerance of floral tissues; however, the underlying mechanism remains unknown. Here, we demonstrate that m6A RNA methylation increases in Arabidopsis flowers and negatively regulates gene expression variability. Stochastic gene expression provides flexibility to cope with environmental stresses. We find that reduced transcriptional fluctuation is associated with compromised activation of heat-responsive genes. Moreover, disruption of an RNA demethylase AtALKBH10B leads to lower gene expression variability, suppression of heat-activated genes, and strong reduction of plant fertility. Our work proposes a novel role for RNA methylation in the bet-hedging strategy of heat stress response.

Keywords: Arabidopsis thaliana; AtALKBH10B; Gene expression variability; Heat tolerance; m6A RNA methylation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis Proteins* / metabolism
  • Arabidopsis* / metabolism
  • Gene Expression
  • Gene Expression Regulation, Plant
  • Methylation
  • RNA / metabolism
  • Thermotolerance* / genetics

Substances

  • Arabidopsis Proteins
  • RNA