Evolution and regulation of microbial secondary metabolism

Elife. 2022 Nov 21:11:e76119. doi: 10.7554/eLife.76119.

Abstract

Microbes have disproportionate impacts on the macroscopic world. This is in part due to their ability to grow to large populations that collectively secrete massive amounts of secondary metabolites and alter their environment. Yet, the conditions favoring secondary metabolism despite the potential costs for primary metabolism remain unclear. Here we investigated the biosurfactants that the bacterium Pseudomonas aeruginosa makes and secretes to decrease the surface tension of surrounding liquid. Using a combination of genomics, metabolomics, transcriptomics, and mathematical modeling we show that the ability to make surfactants from glycerol varies inconsistently across the phylogenetic tree; instead, lineages that lost this ability are also worse at reducing the oxidative stress of primary metabolism on glycerol. Experiments with different carbon sources support a link with oxidative stress that explains the inconsistent distribution across the P. aeruginosa phylogeny and suggests a general principle: P. aeruginosa lineages produce surfactants if they can reduce the oxidative stress produced by primary metabolism and have excess resources, beyond their primary needs, to afford secondary metabolism. These results add a new layer to the regulation of a secondary metabolite unessential for primary metabolism but important to change physical properties of the environments surrounding bacterial populations.

Keywords: Pseudomonas aeruginosa; computational biology; evolutionary biology; mathematical modeling; metabolism; social evolution; systems biology.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, N.I.H., Extramural

MeSH terms

  • Biological Transport
  • Carbon*
  • Glycerol*
  • Phylogeny
  • Pseudomonas aeruginosa / genetics
  • Secondary Metabolism

Substances

  • Glycerol
  • Carbon

Associated data

  • Dryad/10.5061/dryad.7sqv9s4tg