Structure and Dynamics of Human Chemokine CCL16-Implications for Biological Activity

Biomolecules. 2022 Oct 28;12(11):1588. doi: 10.3390/biom12111588.

Abstract

Human C-C motif ligand 16 (CCL16) is a chemokine that is distinguished by a large cleavable C-terminal extension of unknown significance. Conflicting data have been reported concerning its tissue distribution and modulation of expression, rendering the biological function of CCL16 enigmatic. Here, we report an integrated approach to the characterisation of this chemokine, including a re-assessment of its expression characteristics as well as a biophysical investigation with respect to its structure and dynamics. Our data indicate that CCL16 is chiefly synthesised by hepatocytes, without an appreciable response to mediators of inflammation, and circulates in the blood as a full-length protein. While the crystal structure of CCL16 confirms the presence of a canonical chemokine domain, molecular dynamics simulations support the view that the C-terminal extension impairs the accessibility of the glycosaminoglycan binding sites and may thus serve as an intrinsic modulator of biological activity.

Keywords: CCL16; chemokine; glycosaminoglycan; haptotaxis; limited proteolysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chemokines*
  • Chemokines, CC* / metabolism
  • Glycosaminoglycans
  • Humans
  • Ligands

Substances

  • Chemokines, CC
  • Chemokines
  • Ligands
  • Glycosaminoglycans

Grants and funding

D.P. was financially supported by the Jürgen Manchot Foundation. D.P. and B.S. gratefully acknowledge the computing time granted by the JARA-HPC Vergabegremium and VSR commission on the supercomputer JURECA at Forschungszentrum Jülich. C.H. and M.P. are thankful for the funding by the Helmholtz Young Investigator Groups programme and the Excellence Initiative of the German Federal and State Governments. This work was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)–Project-ID 190586431—SFB 974, projects A08 (B.H.) and A11 (D.W.). J.S.a.E. was supported by grants from the German Research Foundation (SCHU 1126/4-1).