Computational Metabolomics Tools Reveal Subarmigerides, Unprecedented Linear Peptides from the Marine Sponge Holobiont Callyspongia subarmigera

Mar Drugs. 2022 Oct 27;20(11):673. doi: 10.3390/md20110673.

Abstract

A detailed examination of a unique molecular family, restricted to the Callyspongia genus, in a molecular network obtained from an in-house Haplosclerida marine sponge collection (including Haliclona, Callyspongia, Xestospongia, and Petrosia species) led to the discovery of subarmigerides, a series of rare linear peptides from Callyspongia subarmigera, a genus mainly known for polyacetylenes and lipids. The structure of the sole isolated peptide, subarmigeride A (1) was elucidated through extensive 1D and 2D NMR spectroscopy, HRMS/MS, and Marfey's method to assign its absolute configuration. The putative structures of seven additional linear peptides were proposed by an analysis of their respective MS/MS spectra and a comparison of their fragmentation patterns with the heptapeptide 1. Surprisingly, several structurally related analogues of subarmigeride A (1) occurred in one distinct cluster from the molecular network of the cyanobacteria strains of the Guadeloupe mangroves, suggesting that the true producer of this peptide family might be the microbial sponge-associated community, i.e., the sponge-associated cyanobacteria.

Keywords: Callyspongia subarmigera; MS/MS; cyanobacteria; linear peptide; marine sponge holobiont; molecular networking.

MeSH terms

  • Animals
  • Callyspongia* / microbiology
  • Metabolomics
  • Molecular Structure
  • Peptides
  • Porifera* / chemistry
  • Tandem Mass Spectrometry

Substances

  • Peptides

Grants and funding

We acknowledge the financial support of the ATM CHEMCYANGROV from the 2019 MNHN grant (France) as well as of the project “biodiversity of microorganisms 2021 CiaAQ” (Italy).