RNA Sequencing of Intestinal Enterocytes Pre- and Post-Roux-en-Y Gastric Bypass Reveals Alteration in Gene Expression Related to Enterocyte Differentiation, Restitution, and Obesity with Regulation by Schlafen 12

Cells. 2022 Oct 18;11(20):3283. doi: 10.3390/cells11203283.

Abstract

Background: The intestinal lining renews itself in a programmed fashion that can be affected by adaptation to surgical procedures such as gastric bypass.

Methods: To assess adaptive mechanisms in the human intestine after Roux-en-Y gastric bypass (RYGB), we biopsied proximal jejunum at the anastomotic site during surgery to establish a baseline and endoscopically re-biopsied the same area 6-9 months after bypass for comparison. Laser microdissection was performed on pre- and post-RYGB biopsies to isolate enterocytes for RNA sequencing.

Results: RNA sequencing suggested significant decreases in gene expression associated with G2/M DNA damage checkpoint regulation of the cell cycle pathway, and significant increases in gene expression associated with the CDP-diacylglycerol biosynthesis pathway TCA cycle II pathway, and pyrimidine ribonucleotide salvage pathway after RYGB. Since Schlafen 12 (SLFN12) is reported to influence enterocytic differentiation, we stained mucosa for SLFN12 and observed increased SLFN12 immunoreactivity. We investigated SLFN12 overexpression in HIEC-6 and FHs 74 Int intestinal epithelial cells and observed similar increased expression of the following genes that were also increased after RYGB: HES2, CARD9, SLC19A2, FBXW7, STXBP4, SPARCL1, and UTS.

Conclusions: Our data suggest that RYGB promotes SLFN12 protein expression, cellular mechanism and replication pathways, and genes associated with differentiation and restitution (HES2, CARD9, SLC19A2), as well as obesity-related genes (FBXW7, STXBP4, SPARCL1, UTS).

Keywords: Schlafen 12 (SLFN12); enterocytes; intestinal epithelial cells; laser microdissection; obesity; weight loss.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Cell Differentiation* / genetics
  • Cytidine Diphosphate Diglycerides / metabolism
  • Enterocytes* / cytology
  • Enterocytes* / metabolism
  • F-Box-WD Repeat-Containing Protein 7 / metabolism
  • Gastric Bypass*
  • Gene Expression
  • Gene Expression Regulation*
  • Humans
  • Intestines
  • Intracellular Signaling Peptides and Proteins* / genetics
  • Membrane Transport Proteins / metabolism
  • Obesity* / genetics
  • Obesity* / metabolism
  • Obesity* / surgery
  • Sequence Analysis, RNA
  • Vesicular Transport Proteins / metabolism

Substances

  • Cytidine Diphosphate Diglycerides
  • F-Box-WD Repeat-Containing Protein 7
  • Membrane Transport Proteins
  • SLC19A2 protein, human
  • STXBP4 protein, human
  • Vesicular Transport Proteins
  • SLFN12 protein, human
  • Intracellular Signaling Peptides and Proteins