Superposed recurrence plots for reconstructing a common input applied to neurons

Phys Rev E. 2022 Sep;106(3-1):034205. doi: 10.1103/PhysRevE.106.034205.

Abstract

In the brain, common inputs play an important role in eliciting synchronous firing in the assembly of neurons. However, common inputs are usually unknown to observers. If an unobserved common input can be reconstructed only from outputs, it would be beneficial to the understanding of communication in the brain. Thus, we have developed a method for reconstructing a common input only from output firing rates of uncoupled neuron models. To this end, we propose a superposed recurrence plot (SRP) comprising points determined by using a union of points at each pixel among multiple recurrence plots. The SRP method can reconstruct a common input when using various types of neurons with different firing rate baselines, even when using uncoupled neuron models that exhibit chaotic responses. The SRP method robustly reconstructs the common input applied to the neuron models when we select adequate time windows to calculate the firing rates in accordance with the width of the fluctuations. These results suggest that certain information is embedded in the firing rate. These findings could be a possible basis for analyzing whole-brain communication utilizing rate coding.