Preparation, characterization, immobilization, and molecular docking analysis of a novel detergent-stable subtilisin-like serine protease from Streptomyces mutabilis strain TN-X30

Int J Biol Macromol. 2022 Dec 1;222(Pt A):1326-1342. doi: 10.1016/j.ijbiomac.2022.09.161. Epub 2022 Sep 20.

Abstract

We recently described the production of a detergent-biocompatible crude protease from Streptomyces mutabilis strain TN-X30. Here, we describe the purification, characterization, and immobilization of the serine alkaline protease (named SPSM), as well as the cloning, sequencing, and over-expression of its corresponding gene (spSM). Pure enzyme was obtained after ammonium sulphate precipitation followed by heat-treatment and Sephacryl® S-200 column purification. The sequence of the first 26 NH2-terminal residues of SPSM showed a high sequence identity to subtilisin-like serine proteases produced by actinobacteria. The spSM gene was heterologously expressed in Escherichia coli BL21(DE3)pLysS and E. coli BL21-AI™ strains using pTrc99A (rSPSM) and Gateway™ pDEST™ 17 [(His)6-tagged SPSM] vectors, respectively. Results obtained indicated that the (His)6-tagged SPSM showed the highest stability. The SPSM was immobilized using encapsulation and adsorption-encapsulation approaches and three different carriers. Features of SPSM in soluble and immobilized forms were analyzed by Fourier transform infrared (FTIR) spectroscopy in attenuated total reflection (ATR) mode, X-ray diffraction (XRD), zeta potential measurements, and field emission scanning electron microscopy (FE-SEM). The white clay and kaolin used in this study are eco-friendly binders to alginate-SPSM and show great potential for application of the immobilized SPSM in various industries. Molecular modeling and docking of N-succinyl-l-Phe-l-Ala-l-Ala-l-Phe-p-nitroanilide in the active site of SPSM revealed the involvement of 21 amino acids in substrate binding.

Keywords: Homology modeling; Hybrid carriers; Organic carriers; Streptomyces; Subtilisin-like serine protease.

MeSH terms

  • Bacterial Proteins / chemistry
  • Cloning, Molecular
  • Detergents*
  • Enzyme Stability
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Hydrogen-Ion Concentration
  • Molecular Docking Simulation
  • Serine / genetics
  • Serine Endopeptidases / metabolism
  • Streptomyces*
  • Subtilisins / metabolism

Substances

  • Detergents
  • Serine
  • Bacterial Proteins
  • Serine Endopeptidases
  • Subtilisins

Supplementary concepts

  • Streptomyces mutabilis