Genome-Wide Identification and Salt Stress Response Analysis of the bZIP Transcription Factor Family in Sugar Beet

Int J Mol Sci. 2022 Sep 30;23(19):11573. doi: 10.3390/ijms231911573.

Abstract

As one of the largest transcription factor families in plants, bZIP transcription factors play important regulatory roles in different biological processes, especially in the process of stress response. Salt stress inhibits the growth and yield of sugar beet. However, bZIP-related studies in sugar beet (Beta vulgaris L.) have not been reported. This study aimed to identify the bZIP transcription factors in sugar beet and analyze their biological functions and response patterns to salt stress. Using bioinformatics, 48 BvbZIP genes were identified in the genome of sugar beet, encoding 77 proteins with large structural differences. Collinearity analysis showed that three pairs of BvbZIP genes were fragment replication genes. The BvbZIP genes were grouped according to the phylogenetic tree topology and conserved structures, and the results are consistent with those reported in Arabidopsis. Under salt stress, the expression levels of most BvbZIP genes were decreased, and only eight genes were up-regulated. GO analysis showed that the BvbZIP genes were mainly negatively regulated in stress response. Protein interaction prediction showed that the BvbZIP genes were mainly involved in light signaling and ABA signal transduction, and also played a certain role in stress responses. In this study, the structures and biological functions of the BvbZIP genes were analyzed to provide foundational data for further mechanistic studies and for facilitating the efforts toward the molecular breeding of stress-resilient sugar beet.

Keywords: bZIP; bioinformatics; expression pattern; salt stress; sugar beet; transcription factor.

MeSH terms

  • Arabidopsis* / genetics
  • Arabidopsis* / metabolism
  • Basic-Leucine Zipper Transcription Factors / genetics
  • Basic-Leucine Zipper Transcription Factors / metabolism
  • Beta vulgaris*
  • Gene Expression Regulation, Plant
  • Phylogeny
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Salt Stress / genetics
  • Stress, Physiological / genetics
  • Sugars / metabolism
  • Transcription Factors / metabolism

Substances

  • Basic-Leucine Zipper Transcription Factors
  • Plant Proteins
  • Sugars
  • Transcription Factors

Grants and funding

This research was supported by the China Postdoctoral Science Foundation (2019M651314); National Science Foundation of China (Project 32072122; Project 31801426); basic research project of basic scientific research business expenses of provincial colleges and universities in Heilongjiang Province (Project KJCXZD201717) and Key Laboratory of Molecular Biology, College of Heilongjiang Province, as well as by faculty startup funds from the University of Mississippi.