In Planta, In Vitro and In Silico Studies of Chiral N6-Benzyladenine Derivatives: Discovery of Receptor-Specific S-Enantiomers with Cytokinin or Anticytokinin Activities

Int J Mol Sci. 2022 Sep 26;23(19):11334. doi: 10.3390/ijms231911334.

Abstract

Cytokinins, classical phytohormones, affect all stages of plant ontogenesis, but their application in agriculture is limited because of the lack of appropriate ligands, including those specific for individual cytokinin receptors. In this work, a series of chiral N6-benzyladenine derivatives were studied as potential cytokinins or anticytokinins. All compounds contained a methyl group at the α-carbon atom of the benzyl moiety, making them R- or S-enantiomers. Four pairs of chiral nucleobases and corresponding ribonucleosides containing various substituents at the C2 position of adenine heterocycle were synthesized. A nucleophilic substitution reaction by secondary optically active amines was used. A strong influence of the chirality of studied compounds on their interaction with individual cytokinin receptors of Arabidopsis thaliana was uncovered in in vivo and in vitro assays. The AHK2 and CRE1/AHK4 receptors were shown to have low affinity for the studied S-nucleobases while the AHK3 receptor exhibited significant affinity for most of them. Thereby, three synthetic AHK3-specific cytokinins were discovered: N6-((S)-α-methylbenzyl)adenine (S-MBA), 2-fluoro,N6-((S)-α-methylbenzyl)adenine (S-FMBA) and 2-chloro,N6-((S)-α-methylbenzyl)adenine (S-CMBA). Interaction patterns between individual receptors and specific enantiomers were rationalized by structure analysis and molecular docking. Two other S-enantiomers (N6-((S)-α-methylbenzyl)adenosine, 2-amino,N6-((S)-α-methylbenzyl)adenosine) were found to exhibit receptor-specific and chirality-dependent anticytokinin properties.

Keywords: 6-benzyladenine derivatives; AHK receptor; R-, S-enantiomers; anticytokinin; chirality; cytokinin; nucleobase; receptor specificity; ribonucleoside.

MeSH terms

  • Adenine
  • Adenosine / pharmacology
  • Amines
  • Arabidopsis Proteins* / metabolism
  • Arabidopsis* / metabolism
  • Benzyl Compounds
  • Carbon
  • Carrier Proteins
  • Cytokinins / chemistry
  • Cytokinins / pharmacology
  • Ligands
  • Molecular Docking Simulation
  • Plant Growth Regulators
  • Protein Kinases / metabolism
  • Purines
  • Ribonucleosides*

Substances

  • Amines
  • Arabidopsis Proteins
  • Benzyl Compounds
  • Carrier Proteins
  • Cytokinins
  • Ligands
  • Plant Growth Regulators
  • Purines
  • Ribonucleosides
  • Carbon
  • Protein Kinases
  • Adenine
  • Adenosine
  • benzylaminopurine

Grants and funding

This research was funded by Russian Science Foundation, grant numbers 21-74-00071 (studies of (anti)cytokinin binding and activities, molecular modeling) and 21-14-00346 (synthesis of bases and nucleosides containing α-phenylethyl chiral fragment and chemo-enzymatic synthesis of compounds AdoBOM and AdeBOM).