Characterisation of Neisseria meningitidis cc11/ET-15 variant by whole genome sequencing

Mem Inst Oswaldo Cruz. 2022 Oct 7:117:e220118. doi: 10.1590/0074-02760220118. eCollection 2022.

Abstract

Background: Neisseria meningitidis strains belonging to clonal complex 11 is the cause of numerous outbreaks and epidemics in the United States, Canada and Europe, accounting for 49.5% of cases of meningococcal disease caused by serogroup C worldwide. In Brazil, it is the second most frequent clonal complex within this serogroup. The genetic characterisation of cc11/ET-15 variants is important for the epidemiological monitoring of meningococcal disease, through the identification of circulating epidemic clones, to support specific actions of Health Surveillance aiming outbreaks control.

Objectives: The objective of this study was to identify features in the genome of cc11/ET-15 clones through whole-genome sequencing (WGS), that differ from cc11/non-ET-15 strains that could explain their virulence.

Methods: The whole genome of three cc11/ET-15 representative strains were sequenced with a minimum coverage of 100X with the MiSeq System and compared to the genome of cc11/non-ET-15 strains.

Results: Genome analysis of cc11/ET-15 variants showed the presence of resistance factors, mobile genetic elements and virulence factors not found in cc11/non-ET-15 strains.

Main conclusions: Our results show that these strains carry virulence factors not identified in cc11/non-ET-15 strains, which could explain the high lethality rates attributed to this clone worldwide.

MeSH terms

  • Humans
  • Meningococcal Infections* / epidemiology
  • Neisseria meningitidis* / genetics
  • Serogroup
  • Virulence Factors
  • Whole Genome Sequencing

Substances

  • Virulence Factors