Uncovering the mechanism of anthocyanin accumulation in a purple-leaved variety of foxtail millet (Setaria italica) by transcriptome analysis

PeerJ. 2022 Oct 3:10:e14099. doi: 10.7717/peerj.14099. eCollection 2022.

Abstract

Anthocyanin is a natural pigment that has a functional role in plants to attract pollinating insects and is important in stress response. Foxtail millet (Setaria italica) is known as a nutritional crop with high resistance to drought and barren. However, the molecular mechanism regulating anthocyanin accumulation and the relationship between anthocyanin and the stress resistance of foxtail millet remains obscure. In this study, we screened hundreds of germplasm resources and obtained several varieties with purple plants in foxtail millet. By studying the purple-leaved B100 variety and the control variety, Yugu1 with green leaves, we found that B100 could accumulate a large amount of anthocyanin in the leaf epiderma, and B100 had stronger stress tolerance. Further transcriptome analysis revealed the differences in gene expression patterns between the two varieties. We identified nine genes encoding enzymes related to anthocyanin biosynthesis using quantitative PCR validation that showed significantly higher expression levels in B100 than Yugu1. The results of this study lay the foundation for the analysis of the molecular mechanism of anthocyanin accumulation in foxtail millet, and provided genetic resources for the molecular breeding of crops with high anthocyanin content.

Keywords: Anthocyanin; Foxtail millet; Purple-leaved variety; Transcriptome analysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anthocyanins / genetics
  • Gene Expression Profiling
  • Setaria Plant* / genetics

Substances

  • Anthocyanins

Grants and funding

This work was funded by the National Natural Science Foundation of China (General Program, 32070366 and 31971906), the Shanxi Province Science Found for Excellent Young Scholar (201901D211382), and the Scientific and Technological Innovation Programs of Higher Education Institutions in Shanxi/ STIP (2021L118). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.