Analysis of lncRNA in the skeletal muscle of rabbits at different developmental stages

Cuiyun Y Zhu; Qi Zheng; Qianqian Q Pan; Jing Jing; Shuaiqi Q Qin; Mengyu Y Lou; Yuhang H Yang; Jinbo B Wei; Shuang Li; Fugui G Fang; Yong Liu; Yinghui H Ling

doi:10.3389/fvets.2022.948929

Analysis of lncRNA in the skeletal muscle of rabbits at different developmental stages

Front Vet Sci. 2022 Sep 21:9:948929. doi: 10.3389/fvets.2022.948929. eCollection 2022.

Authors

Cuiyun Y Zhu^{1

2}, Qi Zheng^{1

2}, Qianqian Q Pan^{1

2}, Jing Jing^{1

2}, Shuaiqi Q Qin^{1

2}, Mengyu Y Lou^{1

2}, Yuhang H Yang^{1

2}, Jinbo B Wei^{1

2}, Shuang Li^{1

2}, Fugui G Fang^{1

2}, Yong Liu³, Yinghui H Ling^{1

2}

Affiliations

¹ College of Animal Science and Technology, Anhui Agricultural University, Hefei, China.
² Anhui Province Key Laboratory of Local Livestock and Poultry Genetic Resource Conservation and Bio-Breeding, Anhui Agricultural University, Hefei, China.
³ Key Laboratory of Embryo Development and Reproductive Regulation of Anhui Province, Fuyang Normal University, Fuyang, China.

Abstract

It is universally acknowledged that lncRNA plays an important role in the regulation of animal skeletal muscle development regulation. However, there is a lack of relevant research on lncRNA in rabbit skeletal muscle development. Thus, we explored the expression profiles of lncRNA in rabbits at three growth stages (2-week-old fetus, 6-week-old post-weaning, and 6-month-old adult) using RNA-seq. A total of 554 differentially expressed lncRNAs (235 up- and 319 down-regulated) were found between the post-weaning and fetus groups and 19 (7 up- and 12 down-regulated) between the post-weaning and adult groups and 429 (115 up- and 314 down-regulated) between the fetus and adult. The enrichment pathways in the post-weaning and fetus groups were mainly concentrated at AMPK and PI3K-Akt signaling pathways, and the co-expression results revealed that LINC-2903, LINC-2374, LINC-8591 plays a role in early maintenance of skeletal muscle development. The enriched pathways in the fetus and adult groups were mainly involved in PI3K-Akt signaling pathways with a strong association found in mTOR signaling pathways. Analysis of the co-expression results suggests that LINC-5617 may be involved in the proliferation of embryonic skeletal muscle cells, and that LINC-8613 and LINC-8705 may provide energy for postnatal skeletal muscle development. The specific roles of different lncRNAs in different developmental stages of New Zealand White rabbits obtained. This will contribute to the subsequent study on the regulatory mechanism of muscle development in New Zealand White rabbits.

Keywords: lncRNA; muscle; rabbits; skeletal; transcriptome.