RTN2, a new member of circadian clock genes identified by database mining and bioinformatics prediction, is highly expressed in ovarian cancer

Mol Med Rep. 2022 Nov;26(5):350. doi: 10.3892/mmr.2022.12866. Epub 2022 Sep 30.

Abstract

Increasing evidence suggests that core circadian genes have major roles in the carcinogenic mechanisms of multiple human malignancies. Among these genes, the role of reticulon 2 (RTN2) in ovarian cancer (OV) has so far remained elusive. In the present study, circadian clock gene (CCG) aberrations were systematically assessed across malignancies by using Gene Expression Omnibus and The Cancer Genome Atlas data. The results indicated that various core clock genes (ULK1, ATF3, CRY2, CSF3R, DAAM2, GAS7, NPTXR, PPPIR15A and RTN2) had elevated levels in tumors in comparison with normal tissues and their low expression levels were associated with a better prognosis in OV, indicating that they may be potential candidates for novel investigational approaches. The mRNA and protein expression levels of RTN2 in OV were then further analyzed by reverse transcription‑quantitative PCR and immunohistochemistry, respectively. The results indicated that RTN2 mRNA and protein levels were increased in OV specimens in comparison with control samples. Differentially expressed CCGs, such as RTN2, were suggested as indicators of asynchronous circadian rhythms in cancer, which may provide a theoretical basis for chrono‑therapy.

Keywords: bioinformatics; circadian clock gene; ovarian cancer; reticulon 2.

MeSH terms

  • Carcinoma, Ovarian Epithelial
  • Circadian Clocks* / genetics
  • Computational Biology
  • Female
  • Humans
  • Membrane Proteins* / genetics
  • Muscle Proteins* / genetics
  • Nerve Tissue Proteins* / genetics
  • Ovarian Neoplasms* / genetics
  • RNA, Messenger / genetics

Substances

  • Membrane Proteins
  • Muscle Proteins
  • Nerve Tissue Proteins
  • RNA, Messenger
  • RTN2 protein, human

Grants and funding

This work was supported by the Natural Science Foundation of Zhejiang Province (grant no. LQ21H160011), the Medical and Health Plan of Zhejiang (grant no. 2021KY990, 2022KY310 and 2022KY1115), Ningbo Science and Technology Project (grant no. 2019F1003) and the Natural Science Foundation of Ningbo (grant no. 2019A610306 and 2019A610260).