Devosia litorisediminis sp. nov., isolated from a sand dune

Arch Microbiol. 2022 Sep 15;204(10):623. doi: 10.1007/s00203-022-03181-5.

Abstract

A Gram-negative, aerobic, non-motile, and rod-shaped bacterial strain, designated BSSL-BM10T, was isolated from sand of a dune that was collected from the Yellow Sea, Republic of Korea. It was subjected to a polyphasic taxonomic study. 16S rRNA gene sequence analysis showed that strain BSSL-BM10T fell phylogenetically within the radiation comprising type strains of Devosia species. The 16S rRNA gene sequence of strain BSSL-BM10T shared sequence similarities of 98.2% with the type strain of D. naphthalenivorans and 93.5-97.7% with type strains of other Devosia species. ANI and dDDH values between strain BSSL-BM10T and type strains of 18 Devosia species were 71.0-78.4% and 18.8-21.5%, respectively. The DNA G + C content of strain BSSL-BM10T was 60.9% based on its genomic sequence data. Strain BSSL-BM10T contained Q-10 as the predominant ubiquinone and 11-methyl C18:1 ω7c, C18:1 ω7c, summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), and C16:0 as its major fatty acids. Major polar lipids of strain BSSL-BM10T were phosphatidylglycerol and two unidentified glycolipids. Strain BSSL-BM10T showed distinguishable phenotypic properties with its phylogenetic and genetic distinctiveness separated from recognized Devosia species. Based on data presented in this study, strain BSSL-BM10T should be placed in the genus Devosia. The name Devosia litorisediminis sp. nov. is proposed for strain BSSL-BM10T (= KACC 21633T = NBRC 115152T).

Keywords: Devosia litorisediminis sp. nov.; Genome; Novel species; Polyphasic taxonomy; Sand dune.

MeSH terms

  • Bacterial Typing Techniques
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Glycolipids
  • Phosphatidylglycerols
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sand*
  • Sequence Analysis, DNA
  • Ubiquinone*

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Glycolipids
  • Phosphatidylglycerols
  • RNA, Ribosomal, 16S
  • Sand
  • Ubiquinone