In Vitro Evaluation of In Silico Screening Approaches in Search for Selective ACE2 Binding Chemical Probes

Molecules. 2022 Aug 24;27(17):5400. doi: 10.3390/molecules27175400.

Abstract

New models for ACE2 receptor binding, based on QSAR and docking algorithms were developed, using XRD structural data and ChEMBL 26 database hits as training sets. The selectivity of the potential ACE2-binding ligands towards Neprilysin (NEP) and ACE was evaluated. The Enamine screening collection (3.2 million compounds) was virtually screened according to the above models, in order to find possible ACE2-chemical probes, useful for the study of SARS-CoV2-induced neurological disorders. An enzymology inhibition assay for ACE2 was optimized, and the combined diversified set of predicted selective ACE2-binding molecules from QSAR modeling, docking, and ultrafast docking was screened in vitro. The in vitro hits included two novel chemotypes suitable for further optimization.

Keywords: Neprilysin; QSAR modeling; angiotensin-converting enzyme; blood-brain barrier penetration; enzymology inhibition assay adjustment; in vitro studies; molecular docking; selective ACE2 enzyme binding.

MeSH terms

  • Angiotensin-Converting Enzyme 2*
  • COVID-19*
  • Humans
  • Molecular Docking Simulation
  • Peptidyl-Dipeptidase A / metabolism
  • RNA, Viral
  • SARS-CoV-2

Substances

  • RNA, Viral
  • Peptidyl-Dipeptidase A
  • Angiotensin-Converting Enzyme 2