Numerical Study of the Volcano Effect in Chemotactic Aggregation Based on a Kinetic Transport Equation with Non-instantaneous Tumbling

Abstract

Aggregation of chemotactic bacteria under a unimodal distribution of chemical cues was investigated by Monte Carlo (MC) simulation based on a kinetic transport equation, which considers an internal adaptation dynamics as well as a finite tumbling duration. It was found that there exist two different regimes of the adaptation time, between which the effect of the adaptation time on the aggregation behavior is reversed; that is, when the adaptation time is as small as the running duration, the aggregation becomes increasingly steeper as the adaptation time increases, while, when the adaptation time is as large as the diffusion time of the population density, the aggregation becomes more diffusive as the adaptation time increases. Moreover, the aggregation profile becomes bimodal (volcano) at the large adaptation-time regime when the tumbling duration is sufficiently large while it is always unimodal at the small adaptation-time regime. A remarkable result of this study is the identification of the parameter regime and scaling for the volcano effect. That is, by comparing the results of MC simulations to the continuum-limit models obtained at each of the small and large adaptation-time scalings, it is clarified that the volcano effect arises due to the coupling of diffusion, adaptation, and finite tumbling duration, which occurs at the large adaptation-time scaling.

Keywords: Aggregation; Chemotaxis; Kinetic transport equation; Monte Carlo simulation; Non-instantaneous interaction; Volcano effect.