Comprehensive Analysis of Transcriptional Expression of hsa-mir-21 Predicted Target Genes and Immune Characteristics in Kidney Renal Clear Cell Carcinoma

Int J Med Sci. 2022 Aug 21;19(9):1482-1501. doi: 10.7150/ijms.73404. eCollection 2022.

Abstract

Background: To uncover advanced prognosis biomarkers in patient with kidney renal clear cell carcinoma (KIRC), our study was the first to make a comprehensive analysis of hsa-mir-21 predicted target genes and explore the immune characteristics in KIRC. Methods: In this study, the comprehensive analysis of hsa-mir-21 predicted target genes and immune characteristics in KIRC were analyzed via TIMER2.0, UALCAN, Metascape, Kaplan-Meier plotter, Human Protein Atlas, CancerSEA, JASPAR, GEPIA, R package: GSVA package (version 1.34.0) & immune infiltration algorithm (ssGSEA) and R package: RMS package (version 6.2-0) & SURVIVAL package (version 3.2-10). Results: Up-transcriptional expressions of RP2, NFIA, SPRY1 were significantly associated with favorable prognosis in KIRC, whereas that of TGFBI was markedly significantly to unfavorable prognosis. Additionally, RP2, NFIA, SPRY1 and TGFBI were significantly relevant to the immune infiltration in KIRC. Finally, ZNF263 was a common predicted transcription factor of RP2, NFIA, SPRY1 and TGFBI, which can as an independent indicator for prognosis in KIRC patients. Conclusions: Hsa-mir-21 predicted target genes (RP2, NFIA, SPRY1 and TGFBI) and the common transcription factor ZNF263 could be the advanced prognosis biomarkers in KIRC patients.

Keywords: Hsa-mir-21; Immune Characteristics; Kidney Renal Clear Cell Carcinoma; Predicted Target Gene; Prediction Model; Prognosis; Transcription Factor.

MeSH terms

  • Biomarkers, Tumor
  • Carcinoma, Renal Cell* / genetics
  • Carcinoma, Renal Cell* / immunology
  • Humans
  • Kidney
  • Kidney Neoplasms* / genetics
  • Kidney Neoplasms* / immunology
  • MicroRNAs* / genetics
  • Prognosis
  • Transcription Factors

Substances

  • Biomarkers, Tumor
  • MIRN21 microRNA, human
  • MicroRNAs
  • Transcription Factors