Evolution-Guided Biosynthesis of Terpenoid Inhibitors

ACS Synth Biol. 2022 Sep 16;11(9):3015-3027. doi: 10.1021/acssynbio.2c00188. Epub 2022 Aug 19.

Abstract

Terpenoids, the largest and most structurally diverse group of natural products, include a striking variety of biologically active compounds, from flavors to medicines. Despite their well-documented biochemical versatility, the evolutionary processes that generate new functional terpenoids are poorly understood and difficult to recapitulate in engineered systems. This study uses a synthetic biochemical objective─a transcriptional system that links the inhibition of protein tyrosine phosphatase 1B (PTP1B), a human drug target, to the expression of a gene for antibiotic resistance in Escherichia coli (E. coli)─to evolve a terpene synthase to produce enzyme inhibitors. Site saturation mutagenesis of poorly conserved residues on γ-humulene synthase (GHS), a promicuous enzyme, yielded mutants that improved fitness (i.e., the antibiotic resistance of E. coli) by reducing GHS toxicity and/or by increasing inhibitor production. Intriguingly, a combination of two mutations enhanced the titer of a minority product─a terpene alcohol that inhibits PTP1B─by over 50-fold, and a comparison of similar mutants enabled the identification of a site where mutations permit efficient hydroxylation. Findings suggest that the plasticity of terpene synthases enables an efficient sampling of structurally distinct starting points for building new functional molecules and provide an experimental framework for exploiting this plasticity in activity-guided screens.

Keywords: PTP1B; bacterial two-hybrid systems; directed evolution; protein tyrosine phosphatase; terpene synthase; γ-humulene synthase.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alkyl and Aryl Transferases* / genetics
  • Biological Products*
  • Escherichia coli / genetics
  • Humans
  • Protein Tyrosine Phosphatase, Non-Receptor Type 1
  • Terpenes

Substances

  • Biological Products
  • Terpenes
  • Alkyl and Aryl Transferases
  • Protein Tyrosine Phosphatase, Non-Receptor Type 1