Genetic dissection of grain iron concentration in hexaploid wheat (Triticum aestivum L.) using a genome-wide association analysis method

PeerJ. 2022 Jul 22:10:e13625. doi: 10.7717/peerj.13625. eCollection 2022.

Abstract

Iron (Fe) is an essential micronutrient of the body. Low concentrations of bioavailable Fe in staple food result in micronutrient malnutrition. Wheat (Triticum aestivum L.) is the most important global food crop and thus has become an important source of iron for people. Breeding nutritious wheat with high grain-Fe content has become an effective means of alleviating malnutrition. Understanding the genetic basis of micronutrient concentration in wheat grains may provide useful information for breeding for high Fe varieties through marker-assisted selection (MAS). Hence, in the present study, genome-wide association studies (GWAS) were conducted for grain Fe. An association panel of 207 accessions was genotyped using a 660K SNP array and phenotyped for grain Fe content at three locations. The genotypic and phenotypic data obtained thus were used for GWAS. A total of 911 SNPs were significantly associated with grain Fe concentrations. These SNPs were distributed on all 21 wheat chromosomes, and each SNP explained 5.79-25.31% of the phenotypic variations. Notably, the two significant SNPs (AX-108912427 and AX-94729264) not only have a more significant effect on grain Fe concentration but also have the reliability under the different environments. Furthermore, candidate genes potentially associated with grain Fe concentration were predicted, and 10 candidate genes were identified. These candidate genes were related to transport, translocation, remobilization, and accumulationof ironin wheat plants. These findings will not only help in better understanding the molecular basis of Fe accumulation in grains, but also provide elite wheat germplasms to develop Fe-rich wheat varieties through breeding.

Keywords: GWAS; Grain iron; QTL; SNP; Wheat.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Edible Grain / chemistry
  • Genome-Wide Association Study
  • Humans
  • Iron* / analysis
  • Malnutrition* / genetics
  • Micronutrients / analysis
  • Plant Breeding
  • Quantitative Trait Loci
  • Reproducibility of Results
  • Triticum / genetics

Substances

  • Iron
  • Micronutrients

Grants and funding

This research was funded by the Joint Fund of National Natural Science Foundation of China (U1804102), the Scientific and Technological Research Project of Henan Province (202102110027, 212102110065), the Excellent Youth Fund of Henan Academy of Agricultural Sciences (2020YQ02, 2022YQ13), and the China Postdoctoral Science Foundation (2020M682300). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.