Genome-Wide Association Study of Airway Wall Thickening in a Korean Chronic Obstructive Pulmonary Disease Cohort

Genes (Basel). 2022 Jul 15;13(7):1258. doi: 10.3390/genes13071258.

Abstract

Airway wall thickening (AWT) plays an important pathophysiological role in airway diseases such as chronic obstructive pulmonary disease (COPD). There are only a few studies on the genetic components contributing to AWT in the Korean population. This study aimed to identify AWT-related single-nucleotide polymorphisms (SNPs) using a genome-wide association study (GWAS). We performed GWAS for AWT using the CODA and KUCOPD cohorts. Thereafter, a meta-analysis was performed. Airway wall thickness was measured using automatic segmentation software. The AWT at an internal perimeter of 10 mm (AWT-Pi10) was calculated by the square root of the theoretical airway wall area using the full-width-half-maximum method. We identified a significant SNP (rs11648772, p = 1.41 × 10-8) located in LINC02127, near SALL1. This gene is involved in the inhibition of epithelial-mesenchymal transition in glial cells, and it affects bronchial wall depression in COPD patients. Additionally, we identified other SNPs (rs11970854, p = 1.92 × 10-6; rs16920168, p = 5.29 × 10-6) involved in airway inflammation and proliferation and found that AWT is influenced by these genetic variants. Our study helps identify the genetic cause of COPD in an Asian population and provides a potential basis for treatment.

Keywords: airway wall thickening; chronic obstructive pulmonary disease; genetic variants; genome-wide association study; single-nucleotide polymorphism.

Publication types

  • Meta-Analysis
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cohort Studies
  • Genome-Wide Association Study*
  • Humans
  • Pulmonary Disease, Chronic Obstructive* / genetics
  • Republic of Korea
  • Tomography, X-Ray Computed / methods

Grants and funding

This study was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Ministry of Science and ICT (MSIT) (NRF-2021R1A5A1033157, NRF-2016R1A2B4012155, NRF-2017R1A6A3A11034663, NRF-2020R1I1A1A3073499, and NRF-2020R1I1A1A01071011), the Bio & Medical Technology Development Program of the National Research Foundation of Korea (NRF) funded by the MSIT (2019M3E5D3073365), and the Technology Innovation Program (20016417) funded by the Ministry of Trade, Industry & Energy of Korea. This study was also supported by the Korea Disease Control and Prevention Agency (KDCA) grant (No. 2015-P71001-00 and 2016-E71003-00) and the Korea Health Technology R&D Project through the Korea Health Industry Development Institute (KHIDI), funded by the Ministry of Health and Welfare (No. HI20C0469).