Cell Subsampling Recovers Probative DNA Profile Information from Unresolvable/Undetectable Minor Donors in Mixtures

Genes (Basel). 2022 Jun 22;13(7):1117. doi: 10.3390/genes13071117.

Abstract

When a minor DNA component to a binary mixture is present at a weight ratio of approximately 1:50 or less, the presence of this minor donor is undetectable (or barely detectable) by standard mixture deconvolution approaches. In an attempt to retrieve probative minor donor DNA profile information, multiple quintuple cell subsamples were collected from a 1:50 DNA mixture using direct single cell subsampling (DSCS) paired with probabilistic genotyping (PG), the latter validated for use with single or few cells. DSCS employs a simplified micromanipulation technique paired with an enhanced DNA profiling approach, involving direct cell lysis and a sensitive PCR process, to genotype individual cells. Multiple five-cell subsamples were used to interrogate sufficient cells from the mixture such that some of the created 5-cell "mini-mixture" subsamples contained a cell from the minor donor. The latter mini-mixture subsamples, which now comprised weight ratios of 1:4 as opposed to the bulk mixture 1:50, were analyzed with the PG systems STRmixTM and EuroForMix resulting in a significant probative gain of information, (LR ≅ 1011, compared to standard bulk mixture PG methods, LR ≅ 101-102).

Keywords: few cell PG analysis; mini-mixtures; unresolvable minor donor.

MeSH terms

  • DNA / analysis
  • DNA / genetics
  • DNA Fingerprinting* / methods
  • Genotype
  • Microsatellite Repeats* / genetics
  • Polymerase Chain Reaction / methods

Substances

  • DNA

Grants and funding

The authors would like to thank the State of Florida for initial seed funding for this project. The funders had no role in study design; in the collection, analysis and interpretation of data; in the writing of the report; and in the decision to submit the article for publication.