Halomarinibacterium sedimenti gen. nov., sp. nov., a carotenoid pigment-producing bacterium isolated from marine sediment

Arch Microbiol. 2022 Jul 23;204(8):517. doi: 10.1007/s00203-022-03140-0.

Abstract

A Gram-negative, strictly aerobic, non-motile, rod-shaped bacterial strain CAU 1614T was isolated from a marine sediment sample collected in the Republic of Korea. Optimal growth of strain CAU 1614T proceeded at 30 °C, pH 7.0, and 2% (w/v) NaCl. 16S rRNA gene similarity was lower than 94.5% with genera Aureisphaera, Marinirhabdus, Aureitalea, Gilvibacter, Ulvibacter, and Jejudonia. The highest similarity was with Aureisphaera galaxeae 04OKA003-7T (94.5%). The major cellular fatty acids were iso-C15:0, iso-C16:0, iso-C15:1 G, iso-C16:0 3-OH, and iso-C17:0 3-OH and the predominant menaquinone was MK-6. The polar lipids were phosphatidylethanolamine, phosphoglycolipid, an unidentified lipid, two unidentified aminolipids, and an unidentified glycolipid. The draft genome of strain CAU 1614T was 3.9 Mb and DNA G+C content was 36.0 mol%. On the basis of the phenotypic, chemotaxonomic, and genomic data, strain CAU 1614T presents a novel genus in the family Flavobacteriaceae, for which the name Halomarinibacterium sedimenti gen. nov., sp. nov. is proposed. The type strain is CAU 1614T (= KCTC 82457T = MCCC 1K06083T).

Keywords: 16S rRNA; Flavobacteriaceae; Genome; Halomarinibacterium sedimenti; Marine sediment; Novel genus.

MeSH terms

  • Bacterial Typing Techniques
  • Carotenoids
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Geologic Sediments* / microbiology
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Seawater* / microbiology
  • Sequence Analysis, DNA
  • Vitamin K 2 / chemistry

Substances

  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Vitamin K 2
  • Carotenoids