LRF Promotes Indirectly Advantageous Chromatin Conformation via BGLT3-lncRNA Expression and Switch from Fetal to Adult Hemoglobin

Int J Mol Sci. 2022 Jun 24;23(13):7025. doi: 10.3390/ijms23137025.

Abstract

The hemoglobin switch from fetal (HbF) to adult (HbA) has been studied intensively as an essential model for gene expression regulation, but also as a beneficial therapeutic approach for β-hemoglobinopathies, towards the objective of reactivating HbF. The transcription factor LRF (Leukemia/lymphoma-related), encoded from the ZBTB7A gene has been implicated in fetal hemoglobin silencing, though has a wide range of functions that have not been fully clarified. We thus established the LRF/ZBTB7A-overexpressing and ZBTB7A-knockdown K562 (human erythroleukemia cell line) clones to assess fetal vs. adult hemoglobin production pre- and post-induction. Transgenic K562 clones were further developed and studied under the influence of epigenetic chromatin regulators, such as DNA methyl transferase 3 (DNMT3) and Histone Deacetylase 1 (HDAC1), to evaluate LRF's potential disturbance upon the aberrant epigenetic background and provide valuable information of the preferable epigenetic frame, in which LRF unfolds its action on the β-type globin's expression. The ChIP-seq analysis demonstrated that LRF binds to γ-globin genes (HBG2/1) and apparently associates BCL11A for their silencing, but also during erythropoiesis induction, LRF binds the BGLT3 gene, promoting BGLT3-lncRNA production through the γ-δ intergenic region of β-type globin's locus, triggering the transcriptional events from γ- to β-globin switch. Our findings are supported by an up-to-date looping model, which highlights chromatin alterations during erythropoiesis at late stages of gestation, to establish an "open" chromatin conformation across the γ-δ intergenic region and accomplish β-globin expression and hemoglobin switch.

Keywords: BGLT3-lncRNA expression; LRF/ZBTB7A overexpression; chromatin conformation; hemoglobin switch.

MeSH terms

  • Adult
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism
  • Cell Line, Tumor
  • Chromatin / genetics
  • Chromatin / metabolism
  • DNA, Intergenic / genetics
  • DNA, Intergenic / metabolism
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Fetal Hemoglobin / genetics
  • Fetal Hemoglobin / metabolism
  • Hemoglobin A / genetics
  • Hemoglobin A / metabolism
  • Humans
  • RNA, Long Noncoding* / genetics
  • RNA, Long Noncoding* / metabolism
  • Transcription Factors* / genetics
  • Transcription Factors* / metabolism
  • beta-Globins / genetics
  • beta-Globins / metabolism
  • gamma-Globins / genetics
  • gamma-Globins / metabolism

Substances

  • Carrier Proteins
  • Chromatin
  • DNA, Intergenic
  • DNA-Binding Proteins
  • RNA, Long Noncoding
  • Transcription Factors
  • ZBTB7A protein, human
  • beta-Globins
  • gamma-Globins
  • Hemoglobin A
  • Fetal Hemoglobin