Polydopamine nanospheres-assisted direct PCR for rapid detection of Escherichia coli O157:H7

Anal Biochem. 2022 Oct 1:654:114797. doi: 10.1016/j.ab.2022.114797. Epub 2022 Jul 4.

Abstract

Polymerase chain reaction (PCR) is one of the most common methods for rapid monitoring of foodborne pathogens; however, it requires purified nucleic acid as a template. Conventional nucleic acid purification is a time-consuming and laborious process. To overcome this, we developed polydopamine nanospheres (PDA NPs)-assisted direct PCR for detecting Escherichia coli O157:H7 (E. coli O157:H7). PDA NPs significantly enhanced PCR efficiency because of their strong interaction with PCR reagents, including polymerase and primers, thereby enabling regulation of the PCR performance. The optimal concentration and diameter for PDA NPs were 0.10 μg/μL and 504 nm, respectively. The PDA NPs-assisted direct PCR exhibited high sensitivity in E.coli O157:H7 detection. The detection limit of PDA NPs-assisted direct PCR was 6.7 × 104 CFU/mL, which was 10-fold lower than that of direct PCR (6.7 × 105 CFU/mL). Moreover, the sensor demonstrated excellent selectivity against E. coli O157:H7, with a negative reaction to eight other common pathogens. Most importantly, the PDA NPs-assisted direct PCR detected the order of 104-5 CFU/mL E.coli O157:H7 in milk, beef, and watermelon samples. No cultural enrichment was required, with the whole process taking <3 h. Therefore, PDA NPs-assisted direct PCR has tremendous potential in the rapid and sensitive detection of pathogens.

Keywords: Detection; Escherichia coli O157:H7; Polydopamine nanospheres; Polydopamine nanospheres-assisted direct PCR; Polymerase chain reaction.

MeSH terms

  • Animals
  • Cattle
  • Citrullus / microbiology
  • Escherichia coli O157* / genetics
  • Escherichia coli O157* / isolation & purification
  • Food Microbiology*
  • Indoles
  • Milk / microbiology
  • Nanospheres*
  • Nucleic Acids*
  • Polymerase Chain Reaction / methods
  • Polymers
  • Red Meat / microbiology

Substances

  • Indoles
  • Nucleic Acids
  • Polymers
  • polydopamine