G4-quadruplex-binding proteins: review and insights into selectivity

Vanessa Meier-Stephenson

doi:10.1007/s12551-022-00952-8

G4-quadruplex-binding proteins: review and insights into selectivity

Biophys Rev. 2022 Apr 20;14(3):635-654. doi: 10.1007/s12551-022-00952-8. eCollection 2022 Jun.

Author

Vanessa Meier-Stephenson^{1

2

3}

Affiliations

¹ Department of Medicine, Division of Infectious Diseases, University of Alberta, Edmonton, AB Canada.
² Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, AB Canada.
³ Li Ka Shing Institute of Virology, University of Alberta, Edmonton, AB Canada.

Abstract

There are over 700,000 putative G4-quadruplexes (G4Qs) in the human genome, found largely in promoter regions, telomeres, and other regions of high regulation. Growing evidence links their presence to functionality in various cellular processes, where cellular proteins interact with them, either stabilizing and/or anchoring upon them, or unwinding them to allow a process to proceed. Interest in understanding and manipulating the plethora of processes regulated by these G4Qs has spawned a new area of small-molecule binder development, with attempts to mimic and block the associated G4-binding protein (G4BP). Despite the growing interest and focus on these G4Qs, there is limited data (in particular, high-resolution structural information), on the nature of these G4Q-G4BP interactions and what makes a G4BP selective to certain G4Qs, if in fact they are at all. This review summarizes the current literature on G4BPs with regards to their interactions with G4Qs, providing groupings for binding mode, drawing conclusions around commonalities and highlighting information on specific interactions where available.

Keywords: DNA–protein interactions; G4-quadruplexes; Quadruplex-binding proteins; RNA–protein interactions.

Publication types

Review