Interacting partners of Golgi-localized small G protein Arl5b identified by a combination of in vivo proximity labelling and GFP-Trap pull down

FEBS Lett. 2022 Sep;596(18):2382-2399. doi: 10.1002/1873-3468.14443. Epub 2022 Aug 1.

Abstract

The small G protein Arl5b is localised on the trans-Golgi network (TGN) and regulates endosomes-to-TGN transport. Here, we combined in vivo and in vitro techniques to map the interactive partners and near neighbours of Arl5b at the TGN, using constitutively active, membrane-bound Arl5b(Q70L)-GFP in stably expressing HeLa cells, and the proximity labelling techniques BioID and APEX2 in parallel with GFP-Trap pull down. From MS analysis, 22 Golgi proteins were identified; 50% were TGN-localised Rabs, Arfs and Arls. The scaffold/tethering factors ACBD3 (GCP60) and PIST (GOPC) were also identified, and we show that Arl5b is required for TGN recruitment of ACBD3. Overall, the combination of in vivo labelling and direct pull downs indicates a highly organised complex of small G proteins on TGN membranes.

Keywords: ACBD3/GCP60; Arl5b; in vivo proximity labelling; membrane transport; small G proteins; tethering factors; trans-Golgi network.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • ADP-Ribosylation Factors / genetics
  • ADP-Ribosylation Factors / metabolism
  • Adaptor Proteins, Signal Transducing / metabolism
  • Endosomes / metabolism
  • Golgi Apparatus / metabolism
  • HeLa Cells
  • Humans
  • Membrane Proteins / metabolism
  • Monomeric GTP-Binding Proteins* / metabolism
  • Protein Transport / physiology
  • trans-Golgi Network / metabolism

Substances

  • ACBD3 protein, human
  • Adaptor Proteins, Signal Transducing
  • Membrane Proteins
  • ARL5B protein, human
  • ADP-Ribosylation Factors
  • Monomeric GTP-Binding Proteins