Challenges of variant reinterpretation: Opinions of stakeholders and need for guidelines

Genet Med. 2022 Sep;24(9):1878-1887. doi: 10.1016/j.gim.2022.06.002. Epub 2022 Jun 29.

Abstract

Purpose: The knowledge used to classify genetic variants is continually evolving, and the classification can change on the basis of newly available data. Although up-to-date variant classification is essential for clinical management, reproductive planning, and identifying at-risk family members, there is no consistent practice across laboratories or clinicians on how or under what circumstances to perform variant reinterpretation.

Methods: We conducted exploratory focus groups (N = 142) and surveys (N = 1753) with stakeholders involved in the process of variant reinterpretation (laboratory directors, clinical geneticists, genetic counselors, nongenetic providers, and patients/parents) to assess opinions on key issues, including initiation of reinterpretation, variants to report, termination of the responsibility to reinterpret, and concerns about consent, cost, and liability.

Results: Stakeholders widely agreed that there should be no fixed termination point to the responsibility to reinterpret a previously reported genetic variant. There were significant concerns about liability and lack of agreement about many logistical aspects of variant reinterpretation.

Conclusion: Our findings suggest a need to (1) develop consensus and (2) create transparency and awareness about the roles and responsibilities of parties involved in variant reinterpretation. These data provide a foundation for developing guidelines on variant reinterpretation that can aid in the development of a low-cost, scalable, and accessible approach.

Keywords: Genetic testing; Liability; Variant of uncertain significance; Variant reclassification; Variant reinterpretation.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Counselors*
  • Focus Groups
  • Genetic Testing*
  • Humans
  • Laboratories
  • Surveys and Questionnaires