Screening and Isolation of Potential Anti-Inflammatory Compounds from Saxifraga atrata via Affinity Ultrafiltration-HPLC and Multi-Target Molecular Docking Analyses

Nutrients. 2022 Jun 9;14(12):2405. doi: 10.3390/nu14122405.

Abstract

In this study, a 100 g sample of Saxifraga atrata was processed to separate 1.3 g of 11-O-(4′-O-methylgalloyl)-bergenin (Fr1) after 1 cycle of MCI GEL® CHP20P medium pressure liquid chromatography using methanol/water. Subsequently, COX-2 affinity ultrafiltration coupled with reversed-phase liquid chromatography was successfully used to screen for potential COX-2 ligands in this target fraction (Fr1). After 20 reversed-phase liquid chromatography runs, 74.1 mg of >99% pure 11-O-(4′-O-methylgalloyl)-bergenin (Fr11) was obtained. In addition, the anti-inflammatory activity of 11-O-(4′-O-methylgalloyl)-bergenin was further validated through molecular docking analyses which suggested it was capable of binding strongly to ALOX15, iNOS, ERBB2, SELE, and NF-κB. As such, the AA metabolism, MAPK, and NF-κB signaling pathways were hypothesized to be the main pathways through which 11-O-(4′-O-methylgalloyl)-bergenin regulates inflammatory responses, potentially functioning by reducing pro-inflammatory cytokine production, blocking pro-inflammatory factor binding to cognate receptors and inhibiting the expression of key proteins. In summary, affinity ultrafiltration-HPLC coupling technology can rapidly screen for multi-target bioactive components and when combined with molecular docking analyses, this approach can further elucidate the pharmacological mechanisms of action for these compounds, providing valuable information to guide the further development of new multi-target drugs derived from natural products.

Keywords: 11-O-(4′-O-methylgalloyl)-bergenin; Saxifraga atrata; affinity ultrafiltration; molecular docking; preparative isolation.

MeSH terms

  • Anti-Inflammatory Agents / pharmacology
  • Chromatography, High Pressure Liquid / methods
  • Cyclooxygenase 2 / metabolism
  • Mass Spectrometry
  • Molecular Docking Simulation
  • NF-kappa B
  • Saxifragaceae* / metabolism
  • Ultrafiltration* / methods

Substances

  • Anti-Inflammatory Agents
  • NF-kappa B
  • Cyclooxygenase 2

Grants and funding

This research was funded by the Young Scholars in Western China, Chinese Academy of Sciences (2022), the Kunlun Talent and High-end Innovation and Entrepreneurship Talents (2021), Key Laboratory of Medicinal Animal and Plant Resources of Qinghai-Tibetan Plateau in Qinghai Province (2020-ZJ-Y04), the Joint Research Project of Three-River Headwaters National Park, Chinese Academy of Sciences and the People’s Government of Qinghai Province (LHZX-2021-02), Yantai Science and Technology Innovation Development Project (2021XDHZ078) and the Shandong Provincial Science Foundation (ZR2020MH380).