Genome-Wide RNA Sequencing Analysis in Human Dermal Fibroblasts Exposed to Low-Dose Ultraviolet A Radiation

Genes (Basel). 2022 May 29;13(6):974. doi: 10.3390/genes13060974.

Abstract

Ultraviolet A (UVA) radiation can pass through the epidermis and reach the dermal skin layer, contributing to photoaging, DNA damage, and photocarcinogenesis in dermal fibroblasts. High-dose UVA exposure induces erythema, whereas low-dose, long-term UVA exposure causes skin damage and cell senescence. Biomarkers for evaluating damage caused by low-dose UVA in fibroblasts are lacking, making it difficult to develop therapeutic agents for skin aging and aging-associated diseases. We performed RNA-sequencing to investigate gene and pathway alterations in low-dose UVA-irradiated human skin-derived NB1RGB primary fibroblasts. Differentially expressed genes were identified and subjected to Gene Ontology and reactome pathway analysis, which revealed enrichment in genes in the senescence-associated secretory phenotype, apoptosis, respiratory electron transport, and transcriptional regulation by tumor suppressor p53 pathways. Insulin-like growth factor binding protein 7 (IGFBP7) showed the lowest p-value in RNA-sequencing analysis and was associated with the senescence-associated secretory phenotype. Protein-protein interaction analysis revealed that Fos proto-oncogene had a high-confidence network with IGFBP7 as transcription factor of the IGFBP7 gene among SASP hit genes, which were validated using RT-qPCR. Because of their high sensitivity to low-dose UVA radiation, Fos and IGFBP7 show potential as biomarkers for evaluating the effect of low-dose UVA radiation on dermal fibroblasts.

Keywords: Fos; IGFBP7; biomarker; differentially expressed gene; low-dose UVA; senescence-associated secretory phenotype; ultraviolet A.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Fibroblasts* / metabolism
  • Humans
  • RNA / metabolism
  • Sequence Analysis, RNA
  • Skin / radiation effects
  • Ultraviolet Rays* / adverse effects

Substances

  • RNA

Grants and funding

This work was supported by a fund from C’BON COSMETICS Co., Ltd (Tokyo, Japan). to T.H. T.H. was also supported by the Waseda University Grant for Special Research Projects (2020C-375), Waseda University Advanced Research Center for Human Sciences, MEXT JSPS KAKENHI grants (grant numbers: 17K08621, 20H03408), Takeda Science Foundation, and JSBBA (Japan Society for Bioscience, Biotechnology, and Agrochemistry).