Hiding in plain sight: three chemically distinct α-helix types

Q Rev Biophys. 2022 Jun 20:55:e7. doi: 10.1017/S0033583522000063.

Abstract

Linus Pauling in 1950 published a three-dimensional model for a universal protein secondary structure motif which he initially called the alpha-spiral. Jack Dunitz, then a postdoc in Pauling's lab suggested to Pauling that the term helix is more accurate than spiral when describing the right-handed peptide and protein coiled structures. Pauling agreed, hence the rise of the alpha-helix, and, by extension, the ‘double helix’ structure of DNA. Although structural biologists and protein chemists are familiar with varying polar and apolar characters of amino acids in alpha-helices, to non-experts the three chemically distinct alpha-helix types classified here may hide in plain sight.

Keywords: QTY code; Type I-hydrophilic α-helix; Type II-hydrophobic α-helix; Type III-amphiphilic α-helix; membrane protein design.

Publication types

  • Review

MeSH terms

  • Amino Acid Sequence
  • Amino Acids* / chemistry
  • Protein Conformation, alpha-Helical
  • Protein Structure, Secondary
  • Proteins* / chemistry

Substances

  • Amino Acids
  • Proteins