Diagnosis of dengue virus infection using spectroscopic images and deep learning

PeerJ Comput Sci. 2022 Jun 1:8:e985. doi: 10.7717/peerj-cs.985. eCollection 2022.

Abstract

Dengue virus (DENV) infection is one of the major health issues and a substantial epidemic infectious human disease. More than two billion humans are living in dengue susceptible regions with annual infection mortality rate is about 5%-20%. At initial stages, it is difficult to differentiate dengue virus symptoms with other similar diseases. The main objective of this research is to diagnose dengue virus infection in human blood sera for better treatment and rehabilitation process. A novel and robust approach is proposed based on Raman spectroscopy and deep learning. In this regard, the ResNet101 deep learning model is modified by exploiting transfer learning (TL) concept on Raman spectroscopic data of human blood sera. Sample size was selected using standard statistical tests. The proposed model is evaluated on 2,000 Raman spectra images in which 1,200 are DENV-infected of human blood sera samples, and 800 are healthy ones. It offers 96.0% accuracy on testing data for DENV infection diagnosis. Moreover, the developed approach demonstrated minimum improvement of 6.0% and 7.0% in terms of AUC and Kappa index respectively over the other state-of-the-art techniques. The developed model offers superior performance to capture minute Raman spectral variations due to the better residual learning capability and generalization ability compared to others deep learning models. The developed model revealed that it might be applied for diagnosis of DENV infection to save precious human lives.

Keywords: Deep Learning; Dengue; Plasma; Raman Spectroscopy; Spectra.

Associated data

  • figshare/10.6084/m9.figshare.18771410.v1

Grants and funding

This research was supported by the BK21 FOUR Program (Fostering Outstanding Universities for Research, 5199991714138) funded by the Ministry of Education (MOE, Korea) and National Research Foundation of Korea (NRF). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.