Backbone resonance assignments and dynamics of S. cerevisiae SERF

Biomol NMR Assign. 2022 Oct;16(2):187-190. doi: 10.1007/s12104-022-10077-4. Epub 2022 Jun 17.

Abstract

Abnormal protein aggregation and precipitation are associated with the perturbation of cellular function and underlie a variety of neurodegenerative diseases. S. cerevisiae SERF (ScSERF), a homolog of modifier of aggregation-4 (MOAG-4) and small EDRK-rich factor protein (SERF1a) is highly conserved and discovered as an enhancer of amyloid formation of Aβ40 and α-synuclein both in vitro and in vivo. However, the detailed molecular mechanism whereby ScSERF and its homologs accelerate amyloid formation is not well known yet. Herein, we present the 1 H, 15 N and 13 C NMR assignments of the 68 amino acids long ScSERF. Although ScSERF displays a very high degree of disorder, secondary chemical shifts of Cα, Cβ, 15 N{1 H}-NOE values and the residue-specific secondary structure propensity (SSP) scores indicate the segment spanning residues 36E-65 K has a strong helical propensity. This work sets the stage for further detailed structural and dynamic investigations of ScSERF and the molecular mechanism it utilizes in accelerating amyloid formation.

Keywords: Assignments; Intrinsically disordered protein; NMR; ScSERF.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids
  • Amyloid / chemistry
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Aggregates
  • Saccharomyces cerevisiae Proteins / chemistry*
  • Saccharomyces cerevisiae* / metabolism
  • alpha-Synuclein / chemistry

Substances

  • Amino Acids
  • Amyloid
  • Protein Aggregates
  • Saccharomyces cerevisiae Proteins
  • YDL085C-A protein, S cerevisiae
  • alpha-Synuclein