Cryo-EM structures of pentameric autoinducer-2 exporter from Escherichia coli reveal its transport mechanism

EMBO J. 2022 Sep 15;41(18):e109990. doi: 10.15252/embj.2021109990. Epub 2022 Jun 14.

Abstract

Bacteria utilize small extracellular molecules to communicate in order to collectively coordinate their behaviors in response to the population density. Autoinducer-2 (AI-2), a universal molecule for both intra- and inter-species communication, is involved in the regulation of biofilm formation, virulence, motility, chemotaxis, and antibiotic resistance. While many studies have been devoted to understanding the biosynthesis and sensing of AI-2, very little information is available on its export. The protein TqsA from Escherichia coli, which belongs to the AI-2 exporter superfamily, has been shown to export AI-2. Here, we report the cryogenic electron microscopic structures of two AI-2 exporters (TqsA and YdiK) from E. coli at 3.35 Å and 2.80 Å resolutions, respectively. Our structures suggest that the AI-2 exporter exists as a homo-pentameric complex. In silico molecular docking and native mass spectrometry experiments were employed to demonstrate the interaction between AI-2 and TqsA, and the results highlight the functional importance of two helical hairpins in substrate binding. We propose that each monomer works as an independent functional unit utilizing an elevator-type transport mechanism.

Keywords: TqsA; YdiK; autoinducer-2; pentamer; quorum sensing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry
  • Cryoelectron Microscopy
  • Escherichia coli* / metabolism
  • Homoserine* / analogs & derivatives
  • Homoserine* / analysis
  • Homoserine* / metabolism
  • Lactones
  • Molecular Docking Simulation
  • Quorum Sensing

Substances

  • Bacterial Proteins
  • Lactones
  • N-octanoylhomoserine lactone
  • Homoserine

Associated data

  • PDB/7NB6
  • PDB/7OT9